CDS

Accession Number TCMCG016C22225
gbkey CDS
Protein Id OMO61404.1
Location join(5627..5715,5794..6004,6442..6555,6654..6739,6891..7278,7366..7833,7924..8244,9302..9628)
Organism Corchorus capsularis
locus_tag CCACVL1_23529

Protein

Length 667aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215142; BioSample:SAMN03290679;
db_source AWWV01013470.1
Definition Mediator complex, subunit Med17 [Corchorus capsularis]
Locus_tag CCACVL1_23529

EGGNOG-MAPPER Annotation

COG_category S
Description mediator of RNA polymerase II transcription subunit
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko03021        [VIEW IN KEGG]
KEGG_ko ko:K15133        [VIEW IN KEGG]
EC -
KEGG_Pathway ko04919        [VIEW IN KEGG]
map04919        [VIEW IN KEGG]
GOs GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0014070        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016441        [VIEW IN EMBL-EBI]
GO:0016458        [VIEW IN EMBL-EBI]
GO:0016592        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0031047        [VIEW IN EMBL-EBI]
GO:0031050        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0035194        [VIEW IN EMBL-EBI]
GO:0035195        [VIEW IN EMBL-EBI]
GO:0035196        [VIEW IN EMBL-EBI]
GO:0040029        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043331        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070887        [VIEW IN EMBL-EBI]
GO:0070918        [VIEW IN EMBL-EBI]
GO:0071310        [VIEW IN EMBL-EBI]
GO:0071359        [VIEW IN EMBL-EBI]
GO:0071407        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901698        [VIEW IN EMBL-EBI]
GO:1901699        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGACGAAACCCTAAAAATCTCCTTGGATAAGCTTCCCGTTAAACGCCTAGACGCCATCGAAGAAAATGGCGTCGAAAAATATCCTCCCGAGTCGAGCTACGACGAGAAGCGAGTGTCACTGATACGGCGGATAGACTTCGGATGGGCGGTGGAAGATGACGAAGAAAGGGAGAGGAAGAAGAAGCAGAAGAAGAAGAGCTCCAAAGATGCCTCCGCAACGTGGCAGTGGCAGGGCATGGTTGAGAATCTCCAATTGGCTCACCAGGAGCTCTCCGTCATCATTGACCTTATCAACACTGTGGAAGCTAATGATGCTGTCACGGTGGCTGGCATGACCAGGCCAAAGCCATTACCTAATGAGGTCCTGTCTGATCTTGCTGTATGTGCTGCAACCAAGCTACAATCTTACCGGCAACTGGGTAAATACTTCAAACAGTCTGCCAAAGCTTTGGAACAACAGATAGCTAGGGAAGCAAGATTTTATGGTGCTCTAATCAGATTGCAGCAAAATTGGAAAGTTAAACGACAACGAGTGGCAGCTCCAGCTTCAAGCAATGAAGGCTTCACTATTGATCTTTTTGATAATTCCTTATATGACTCAGCAGCAATGTCTCGTCGACCTTCTCTATCTGCAATTCGTGTTGAACACGATTCAGCTGGAATGCTGGCTATCAACTTACCTCCCAATTCATGTCGCTCTCTTCATTTTGGTTTTCTTGGTCTGCATTCTGCTGATATTTCAAAAGAATCAAGTAAGATCAGGATGCATAGCTCAGTTGAGCAGCAAACAAGAGATACTGAGAAAGAATCAATTGGTGATGATGAGTGCATCAAGGAATCACACTTGAACCTTCGTGAAGTTCATCAATCAATCTTTGATGAGCAGGTGTTTGATATGGTGAATCGTGAAGCTTTCAACCAATCTGTTGGACTCAGTGTAACTGGAATACGAGAAAATTATCTGCAATTGAGCATAGGTCAAGGAACCTCTCTGTTCATATCACTCATGCCATCTAGTAAGGGTGACGAGCAGGTTGTTGGCCCTGCCAATAGCCAGAATTTAGATTCTGCAATTGTACCGATGGACTCATTTGATGATCTGAAATCAGGAGAAGGAAAACATGATAGTACTCGGAAGAAATTGGGTTTCCCTAATCGTATAAGTTGTGAAATATATCTGCAGCAAATTGTCCATGAACATGGATTTATAAAATCGGAGGACCGACCAAATCTATCTGGGACTCGAGCATCTGGCCAATCAGGAAAAGATGGATGTGGTCTTGTTGGTCATTTTTGTCTCTCTCTGGCTCATAGAATCTTTTCAAACAGAGTTCTTATGGAGCTGGAAAATGTGGTTTGCAGGGTGCCATATCTCCATTTGATGACCCATCCCACTTGGCATTCTCGGACATCTTCCTGGACAATCTTTATGAAAATTCCTCAGTCCATTCTTCATGCAGAGTCCCGGTCCCCGAAATCAGACTTCCAGAACATGAAAGATGCTATAAAATCACAATTCCGTACCAAGGTGGTGGTGCATGATGACCGTATTAATGTTGAAGGGGAAGGTGCTCCTAATGTTGTTGGCTTGTTCAAAAGAAGTTCTGAGGACATATGTTCTATAAACAAATATGACTGTGACTTAGCTGATCTTCCTATTATAATACTGCAGCAGGCTGCAAGCCAAGTTATCCGCTGGCTTCATGAGGAAGCTCTTACGGTGGGAATAAAAACAACTCGGGAGTTCTTGTGCTTGACTTTTGAGCTAGAACAGGGGGAGACTGTTAGCCTAGTGGCCCATGTGGATCCAGAAGATGTTCAAGGCTGCATCTCTTGGTGGTTAGTGATGGAAGATGGATTTGCAGAGGATTGGAAACTTCAAATGGACATGTCTACCGGTTCATCAGAGTATCGAAAGTTTTTGGGGCATTTATCTTTGGATGTCTTATACTCAACGTTGATGGACTTGGTTAGCTTGTGTGGTGGAAGCGGAAACCATTGA
Protein:  
MDETLKISLDKLPVKRLDAIEENGVEKYPPESSYDEKRVSLIRRIDFGWAVEDDEERERKKKQKKKSSKDASATWQWQGMVENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLSDLAVCAATKLQSYRQLGKYFKQSAKALEQQIAREARFYGALIRLQQNWKVKRQRVAAPASSNEGFTIDLFDNSLYDSAAMSRRPSLSAIRVEHDSAGMLAINLPPNSCRSLHFGFLGLHSADISKESSKIRMHSSVEQQTRDTEKESIGDDECIKESHLNLREVHQSIFDEQVFDMVNREAFNQSVGLSVTGIRENYLQLSIGQGTSLFISLMPSSKGDEQVVGPANSQNLDSAIVPMDSFDDLKSGEGKHDSTRKKLGFPNRISCEIYLQQIVHEHGFIKSEDRPNLSGTRASGQSGKDGCGLVGHFCLSLAHRIFSNRVLMELENVVCRVPYLHLMTHPTWHSRTSSWTIFMKIPQSILHAESRSPKSDFQNMKDAIKSQFRTKVVVHDDRINVEGEGAPNVVGLFKRSSEDICSINKYDCDLADLPIIILQQAASQVIRWLHEEALTVGIKTTREFLCLTFELEQGETVSLVAHVDPEDVQGCISWWLVMEDGFAEDWKLQMDMSTGSSEYRKFLGHLSLDVLYSTLMDLVSLCGGSGNH